Is bacterial microbiome from the Polemonium caeruleum L. (Polemoniaceae) nectar geographically variable?
Abstract
Keywords
Full Text:
PDFReferences
Herrera CM, de Vega C, Canto A, Pozo MI. Yeasts in floral nectar: a quantitative survey. Ann Bot. 2009;103:1415–1423. https://doi.org/10.1093/aob/mcp026
Vannette RL, Gauthier MP, Fukami T. Nectar bacteria, but not yeast, weaken a plant–pollinator mutualism. Proc R Soc Lond B Biol Sci. 2012;280:e20122601. https://doi.org/10.1098/rspb.2012.2601
Jacquemyn H, Lenaerts M, Brys R, Willems K, Honnay O, Lievens B. Among-population variation in microbial community structure in the floral nectar of the bee-pollinated forest herb Pulmonaria officinalis L. PLoS One. 2013;8(3):e56917. https://doi.org/10.1371/journal.pone.0056917
Roy R, Schmitt AJ, Thomas JB, Carter CJ. Nectar biology: from molecules to ecosystems. Plant Sci. 2017;262:148–164. https://doi.org/10.1016/j.plantsci.2017.04.012
Alvarez-Perez S, Herrera CM, de Vega C. Zooming-in on floral nectar: a first exploration of nectar associated bacteria in wild plant communities. FEMS Microbiol Ecol. 2012;80:591–602. https://doi.org/10.1111/j.1574-6941.2012.01329.x
Fridman S, Izhaki I, Gerchman Y, Halpern M. Bacterial communities in floral nectar. Environ Microbiol Rep. 2012;4(1):97–104. https://doi.org/10.1111/j.1758-2229.2011.00309.x
Aizenberg-Gershtein Y, Izhaki I, Halpern M. Do honeybees shape the bacterial community composition in floral nectar? PLoS One. 2013;8(7):e67556. https://doi.org/10.1371/journal.pone.0067556
Junker RR, Keller A. Microhabitat heterogeneity across leaves and flower organs promotes bacterial diversity. FEMS Microbiol Ecol. 2015;91(9):fiv097. https://doi.org/10.1093/femsec/fiv097
Junker RR, Romeike T, Keller A, Langen D. Density-dependent negative responses by bumblebees to bacteria isolated from flowers. Apidologie. 2014;45:467–477. https://doi.org/10.1007/s13592-013-0262-1
Good AP, Gauthier MP, Vannette RL, Fukami T. Honey bees avoid nectar colonized by three bacterial species, but not by a yeast species, isolated from the bee gut. PLoS One. 2014;9(1):e86494. https://doi.org/10.1371/journal.pone.0086494
Samuni-Blank M, Izhaki I, Laviad S, Bar-Massada A, Gerchman Y, Halpern M. The role of abiotic environmental conditions and herbivory in shaping bacterial community composition in floral nectar. PLoS One. 2014;9(6):e99107. https://doi.org/10.1371/journal.pone.0099107
Lenaerts M, Pozo MI, Wäckers F, van den Ende W, Jacquemyn H, Lievens B. Impact of microbial communities on floral nectar chemistry: potential implications for biological control of pest insects. Basic Appl Ecol. 2015;17:189–198. https://doi.org/10.1016/j.baae.2015.10.001
Zych M, Junker RR, Nepi M, Stpiczyńska M, Stolarska B, Roguz K. Spatiotemporal variation in the pollination systems of a supergeneralist plant: is Angelica sylvestris (Apiaceae) locally adapted to its most effective pollinators? Ann Bot. 2019;123(2):415–428. https://doi.org/10.1093/aob/mcy140
Zych M, Stpiczyńska M, Roguz K. Reproductive biology of the red list species Polemonium caeruleum (Polemoniaceae). Bot J Linn Soc. 2013;173:92–107. https://doi.org/10.1111/boj.12071
Ostrowiecka B, Brzosko E, Jermakowicz E, Wróblewska A, Mirski P, Roguz K, et al. Breeding system variability, pollination biology and reproductive success of the rare Polemonium caeruleum L. in NE Poland. Acta Agrobot. 2017;70:1709. https://doi.org/10.5586/aa.1709
Stpiczyńska M, Kamińska M, Zych M. Nectary structure in dichogamous flowers of Polemonium caeruleum L. Acta Biol Crac Ser Bot. 2012;54(2):61–68. https://doi.org/10.2478/v10182-012-0019-6
Martin M. Cutadapt removes adapter sequences from high-throughput sequencing reads. EMBnet J. 2011;17(1):10–12. https://doi.org/10.14806/ej.17.1.200
Rognes T, Flouri T, Nichols B, Quince C, Mahé F. VSEARCH: a versatile open source tool for metagenomics. PeerJ. 2016;4:e2584. https://doi.org/10.7717/peerj.2584
Edgar RC, Haas BJ, Clemente JC, Quince C, Knight R. UCHIME improves sensitivity and speed of chimera detection. Bioinformatics. 2011;27(16):2194–2200. https://doi.org/10.1093/bioinformatics/btr381
Wang Q, Garrity GM, Tiedje JM, Cole JR. Naïve Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Appl Environ Microbiol. 2007;73(16):5261–5267. https://doi.org/10.1128/AEM.00062-07
Quast C, Pruesse E, Yilmaz P, Gerken J, Schweer T, Yarza P, et al. The SILVA ribosomal RNA gene database project: improved data processing and web-based tools. Nucleic Acids Res. 2013;41:D590–D596. https://doi.org/10.1093/nar/gks1219
Caporaso JG, Kuczynski J, Stombaugh J, Bittinger K, Bushman FD, Costello EK, et al. QIIME allows analysis of high-throughput community sequencing data. Nat Methods. 2010;7(5):335–336. https://doi.org/10.1038/nmeth.f.303
Mohr KI, Tebbe CC. Diversity and phylotype consistency of bacteria in the guts of three bee species (Apoidea) at an oilseed rape field. Environ Microbiol. 2006;8(2):258–272. https://doi.org/10.1111/j.1462-2920.2005.00893.x
Praet J, Parmentier A, Schmid-Hempel R, Meeus I, Smagghe G, Vandamme P. Large-scale cultivation of the bumblebee gut microbiota reveals an underestimated bacterial species diversity capable of pathogen inhibition. Environ Microbiol. 2018;20(1):214–227. https://doi.org/10.1111/1462-2920.13973
Pirttilä AM, Frank AC, editors. Endophytes of forest trees. Biology and applications. 2nd ed. Cham: Springer; 2018. (Forestry Sciences; vol 86). https://doi.org/10.1007/978-3-319-89833-9
Kandel SL, Joubert PM, Doty SL. Bacterial endophyte colonization and distribution within plants. Microorganisms. 2017;5(4):77. https://doi.org/10.3390/microorganisms5040077
Izhaki I, Fridman S, Gerchman Y, Halpern M. Variability of bacterial community composition on leaves between and within plant species. Curr Microbiol. 2013;66:227–235. https://doi.org/10.1007/s00284-012-0261-x
Bodenhausen N, Horton MW, Bergelson J. Bacterial communities associated with the leaves and the roots of Arabidopsis thaliana. PLoS One. 2013;8(2):e56329. https://doi.org/10.1371/journal.pone.0056329
Garrity GM, Brenner DJ, Krieg NR, Staley JT, editors. Bergey’s manual of systematic bacteriology. Vol 2. Part B and C. New York, NY: Springer; 2005.
DOI: https://doi.org/10.5586/asbp.3626
|
|
|