The number of cell types, information content, and the evolution of complex multicellularity
Abstract
Keywords
Full Text:
PDFReferences
Valentine JW, Collins AG, Meyer CP. Morphological complexity increase in metazoans. Paleobiology. 1994;20(2):131–142.
Bell G. Size and complexity among multicellular organisms. Biol J Linn Soc. 1997;60(3):345–363. http://dx.doi.org/10.1006/bijl.1996.0108
Erwin DH. Early origin of the bilaterian developmental toolkit. Phil Trans R Soc B. 2009;364(1527):2253–2261. http://dx.doi.org/10.1098/rstb.2009.0038
Chen L, Bush SJ, Tovar-Corona JM, Castillo-Morales A, Urrutia AO. Correcting for differential transcript coverage reveals a strong relationship between alternative splicing and organism complexity. Mol Biol Evol. 2014;31:1402–1413. http://dx.doi.org/10.1093/molbev/msu083
Schad E, Tompa P, Hegyi H. The relationship between proteome size, structural disorder and organism complexity. Genome Biol. 2011;12:R120. http://dx.doi.org/10.1186/gb-2011-12-12-r120
Liu J, Perumal NB, Oldfield CJ, Su EW, Uversky VN, Dunker AK. Intrinsic disorder in transcription factors. Biochemistry (Mosc). 2006;45(22):6873–6888. http://dx.doi.org/10.1021/bi0602718
Oldfield CJ, Meng J, Yang JY, Yang MQ, Uversky VN, Dunker AK. Flexible nets: disorder and induced fit in the associations of p53 and 14-3-3 with their partners. BMC Genomics. 2008;9(1 suppl):S1. http://dx.doi.org/10.1186/1471-2164-9-S1-S1
Tompa P, Fuxreiter M. Fuzzy complexes: polymorphism and structural disorder in protein-protein interactions. Trends Biochem Sci. 2008;33(1):2–8. http://dx.doi.org/10.1016/j.tibs.2007.10.003
Bonner JT. First signals: the evolution of multicellular development. Princeton, NJ: Princeton University Press; 2000.
Kirk DL. A twelve-step program for evolving multicellularity and a division of labor. Bioessays. 2005;27(3):299–310. http://dx.doi.org/10.1002/bies.20197
Herron MD, Michod RE. Evolution of complexity in the volvocine algae: transitions in individuality through Darwin’s eye. Evolution. 2008;62(2):436–451. http://dx.doi.org/10.1111/j.1558-5646.2007.00304.x
Folse HJ, Roughgarden J. What is an individual organism? A multilevel selection perspective. Q Rev Biol. 2010;85(4):447–472.
Niklas KJ. The evolutionary-developmental origins of multicellularity. Am J Bot. 2014;101(1):6–25. http://dx.doi.org/10.3732/ajb.1300314
Silberfeld T, Leigh JW, Verbruggen H, Cruaud C, de Reviers B, Rousseau F. A multi-locus time-calibrated phylogeny of the brown algae (Heterokonta, Ochrophyta, Phaeophyceae): investigating the evolutionary nature of the “brown algal crown radiation”. Mol Phylogenet Evol. 2010;56(2):659–674. http://dx.doi.org/10.1016/j.ympev.2010.04.020
Andersen RA. Biology and systematics of heterokont and haptophyte algae. Am J Bot. 2004;91(10):1508–1522. http://dx.doi.org/10.3732/ajb.91.10.1508
Graham LE. Algae. 2nd ed. San Francisco, CA: Pearson/Benjamin Cummings; 2009.
Parker BC. Translocation in the giant kelp Macrocystis. I. Rates, direction, quantity of C14-labeled products and fluorescein. J Phycol. 1965;1(2):41–46. http://dx.doi.org/10.1111/j.1529-8817.1965.tb04554.x
Parker BC. Translocation in Macrocystis. III. Composition of sieve tube exudate and identification of the major C14-labeled products. J Phycol. 1966;2(1):38–41. http://dx.doi.org/10.1111/j.1529-8817.1966.tb04590.x
Buggeln RG, Fensom DS, Emerson CJ. Translocation of 14C-photoassimilate in the blade of Macrocystis pyrifera (Phaeophyceae). J Phycol. 1985;21(1):35–40. http://dx.doi.org/10.1111/j.0022-3646.1985.00035.x
Ruhfel BR, Gitzendanner MA, Soltis PS, Soltis DE, Burleigh JG. From algae to angiosperms-inferring the phylogeny of green plants (Viridiplantae) from 360 plastid genomes. BMC Evol Biol. 2014;14:23. http://dx.doi.org/10.1186/1471-2148-14-23
Cook M, Graham L, Botha C, Lavin C. Comparative ultrastructure of plasmodesmata of Chara and selected bryophytes: toward an elucidation of the evolutionary origin of plant plasmodesmata. Am J Bot. 1997;84(9):1169–1178.
Boot KJM, Libbenga KR, Hille SC, Offringa R, van Duijn B. Polar auxin transport: an early invention. J Exp Bot. 2012;63(11):4213–4218. http://dx.doi.org/10.1093/jxb/ers106
Foster AS. Comparative morphology of vascular plants. 2nd ed. San Francisco, CA: W.H. Freeman; 1974.
Govindarajalu E. The systematic anatomy of south Indian Cyperaceae. Bot J Linn Soc. 1969;62:27–40.
Adoutte A, Balavoine G, Lartillot N, Lespinet O, Prud’homme B, de Rosa R. The new animal phylogeny: reliability and implications. Proc Natl Acad Sci USA. 2000;97(9):4453–4456. http://dx.doi.org/10.1073/pnas.97.9.4453
Chang CY, Lin WD, Tu SL. Genome-wide analysis of heat-sensitive alternative splicing in Physcomitrella patens. Plant Physiol. 2014;165:826–840. http://dx.doi.org/10.1104/pp.113.230540
Pan Q, Shai O, Lee LJ, Frey BJ, Blencowe BJ. Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing. Nat Genet. 2008;40(12):1413–1415. http://dx.doi.org/10.1038/ng.259
Johnson JM, Castle J, Garrett-Engele P, Kan Z, Loerch PM, Armour CD, et al. Genome-wide survey of human alternative pre-mRNA splicing with exon junction microarrays. Science. 2003;302(5653):2141–2144. http://dx.doi.org/10.1126/science.1090100
Liu J, Perumal NB, Oldfield CJ, Su EW, Uversky VN, Dunker AK. Intrinsic disorder in transcription factors. Biochemistry (Mosc). 2006;45(22):6873–6888. http://dx.doi.org/10.1021/bi0602718
Niklas KJ. Plant allometry: the scaling of form and process. Chicago, IL: University of Chicago Press; 1994.
Hahn MW, Wray GA. The g-value paradox. Evol Dev. 2002;4(2):73–75. http://dx.doi.org/10.1046/j.1525-142X.2002.01069.x
Lang D, Weiche B, Timmerhaus G, Richardt S, Riaño-Pachón DM, Corrêa LGG, et al. Genome-wide phylogenetic comparative analysis of plant transcriptional regulation: a timeline of loss, gain, expansion, and correlation with complexity. Genome Biol Evol. 2010;2:488–503. http://dx.doi.org/10.1093/gbe/evq032
Niklas KJ, Cobb ED, Crawford DR. The evo-devo of multinucleate cells, tissues, and organisms, and an alternative route to multicellularity. Evol Dev. 2013;15(6):466–474. http://dx.doi.org/10.1111/ede.12055
Niklas KJ, Newman SA. The origins of multicellular organisms. Evol Dev. 2013;15(1):41–52. http://dx.doi.org/10.1111/ede.12013
Buss LW. The evolution of individuality. Princeton, NJ: Princeton University Press; 1987.
Michod RE. Evolution of the individual. Am Nat. 1997;150 suppl 1:S5–S21. http://dx.doi.org/10.1086/286047
Schlichting CD. Origins of differentiation via phenotypic plasticity. Evol Dev. 2003;5(1):98–105.
Knoll AH. The multiple origins of complex multicellularity. Annu Rev Earth Planet Sci. 2011;39(1):217–239. http://dx.doi.org/10.1146/annurev.earth.031208.100209
Britten RJ, Davidson EH. Gene regulation for higher cells: a theory. Science. 1969;165(3891):349–357.
Laurent M, Kellershohn N. Multistability: a major means of differentiation and evolution in biological systems. Trends Biochem Sci. 1999;24(11):418–422.
Jaeger J, Monk N. Bioattractors: dynamical systems theory and the evolution of regulatory processes. J Physiol. 2014;592(11):2267–2281. http://dx.doi.org/10.1113/jphysiol.2014.272385
Ispolatov I, Ackermann M, Doebeli M. Division of labour and the evolution of multicellularity. Proc R Soc B. 2012;274:1768–1776. http://dx.doi.org/10.1098/rspb.2011.1999
Yao Q, Gao J, Bollinger C, Thelen JJ, Xu D. Predicting and analyzing protein phosphorylation sites in plants using musite. Front Plant Sci. 2012;3:186. http://dx.doi.org/10.3389/fpls.2012.00186
Yruela I, Contreras-Moreira B. Protein disorder in plants: a view from the chloroplast. BMC Plant Biol. 2012;12(1):165. http://dx.doi.org/10.1186/1471-2229-12-165
Peng K, Radivojac P, Vucetic S, Dunker AK, Obradovic Z. Length-dependent prediction of protein intrinsic disorder. BMC Bioinformatics. 2006;7(1):208. http://dx.doi.org/10.1186/1471-2105-7-208
Oates ME, Romero P, Ishida T, Ghalwash M, Mizianty MJ, Xue B, et al. D2P2: database of disordered protein predictions. Nucl Acids Res. 2012;41:D508–516. http://dx.doi.org/10.1093/nar/gks1226
Ito Y, Hirochika H, Kurata N. Organ-specific alternative transcripts of KNOX family class 2 homeobox genes of rice. Gene. 2002;288(1–2):41–47.
Qin Q, Wang W, Guo X, Yue J, Huang Y, Xu X, et al. Arabidopsis DELLA protein degradation is controlled by a type-one protein phosphatase, TOPP4. PLoS Genet. 2014;10(7):e1004464. http://dx.doi.org/10.1371/journal.pgen.1004464
Minezaki Y, Homma K, Nishikawa K. Genome-wide survey of transcription factors in prokaryotes reveals many bacteria-specific families not found in archaea. DNA Res. 2005;12(5):269–280. http://dx.doi.org/10.1093/dnares/dsi016
Lynch M. The origins of eukaryotic gene structure. Mol Biol Evol. 2006;23(2):450–468. http://dx.doi.org/10.1093/molbev/msj050
Azevedo RBR, Lohaus R, Braun V, Gumbel M, Umamaheshwar M, Agapow PM, et al. The simplicity of metazoan cell lineages. Nature. 2005;433(7022):152–156. http://dx.doi.org/10.1038/nature03178
Peng ZL, Kurgan L. Comprehensive comparative assessment of in-silico predictors of disordered regions. Curr Protein Pept Sci. 2012;13(1):6–18.
DOI: https://doi.org/10.5586/asbp.2014.034
|
|
|